Publications of Carsten Kuenne

Moradi, S.; Guenther, S.; Soori, S.; Sharifi-Zarchi , A.; Kuenne, C.; Khoddami , V.; Tavakol , P.; Kreutzer, S.; Braun, T.; Baharvand, H.: Time-resolved Small-RNA Sequencing Identifies MicroRNAs Critical for Formation of Embryonic Stem Cells from the Inner Cell Mass of Mouse Embryos. STEM CELL REVIEWS AND REPORTS (2023)

Wu, F.; Li, X.; Looso, M.; Liu, H.; Ding, D.; Guenther, S.; Kuenne, C.; Liu, S.; Weissmann, N.; Boettger, T. et al.; Atzberger, A.; Kolahian, S.; Renz, H.; Offermanns, S.; Gaertner, U.; Potente, M.; Zhou, Y.; Yuan, X.; Braun, T.: Spurious transcription causing innate immune responses is prevented by 5-hydroxymethylcytosine. NATURE GENETICS (2023; 55(1)), pp. 100 - 111 (2023)

Zhang, T.; Kuenne, C.; Ding, D.; Guenther, S.; Guo, X.; Zhou, Y.; Yuan, X.; Braun, T.: Replication collisions induced by de-repressed S-phase transcription are connected with malignant transformation of adult stem cells. NATURE COMMUNICATIONS 13 (1), 6907 (2022)

Georgieva, A. M.; Guo, X.; Bartkuhn, M.; Guenther, S.; Kuenne, C.; Smolka, C.; Atzberger, A.; Gaertner, U.; Mamchaoui, K.; Bober, E. et al.; Zhou, Y.; Yuan, X.; Braun, T.: Inactivation of Sirt6 ameliorates muscular dystrophy in mdx mice by releasing suppression of utrophin expression. NATURE COMMUNICATIONS 13 (1), 4184 (2022)

Ustjanzew, A.; Preussner, J.; Bentsen, M.; Kuenne, C.; Looso, M.: i2dash: Creation of Flexible, Interactive, and Web-based Dashboards for Visualization of Omics Data. GENOMICS PROTEOMICS & BIOINFORMATICS 20 (3), pp. 568 - 577 (2022)

Chelladurai, P.; Kuenne, C.; Bourgeois, A.; Guenther, S.; Valasarajan, C.; Cherian V, A.; Rottier, R. J.; Romanet, C.; Weigert, A.; Boucherat, O. et al.; Eichstaedt, C. A.; Ruppert, C.; Guenther, A.; Braun, T.; Looso, M.; Savai, R.; Seeger, W.; Bauer, U.-M.; Bonnet, S.; Pullamsetti, S. S.: Epigenetic reactivation of transcriptional programs orchestrating fetal lung development in human pulmonary hypertension. SCIENCE TRANSLATIONAL MEDICINE 14 (648), eabe5407 (2022)

Bentsen, M.; Heger, V.; Schultheis, H.; Kuenne, C.; Looso, M.: TF-COMB - Discovering grammar of transcription factor binding sites. COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL 20, pp. 4040 - 4051 (2022)

Qi, H.; Liu, H.; Pullamsetti, S. S.; Gunther, S.; Kuenne, C.; Atzberger, A.; Sommer, N.; Hadzic, S.; Gunther, A.; Weissmann, N. et al.; Zhou, Y.; Yuan, X.; Braun, T.: Epigenetic Regulation by Suv4-20h1 in Cardiopulmonary Progenitor Cells Is Required to Prevent Pulmonary Hypertension and Chronic Obstructive Pulmonary Disease. CIRCULATION 144 (13), pp. 1042 - 1058 (2021)

Bhagwat, A. M.; Graumann, J.; Wiegandt, R.; Bentsen, M.; Welker, J.; Kuenne, C.; Preussner, J.; Braun, T.; Looso, M.: multicrispr: gRNA design for prime editing and parallel targeting of thousands of targets. LIFE SCIENCE ALLIANCE 3 (11), e202000757 (2020)

Fukuda, R.; Marin-Juez, R.; EI-Sammak, H.; Beisaw, A.; Ramadass, R.; Kuenne, C.; Guenther, S.; Konzer, A.; Bhagwat, A. M.; Graumann, J. et al.; Stainier, D. Y. R.: Stimulation of glycolysis promotes cardiomyocyte proliferation after injury in adult zebrafish. EMBO REPORTS, e49752 (2020)

Beisaw, A.; Kuenne, C.; Guenther, S.; Dallmann, J.; Wu, C.-C.; Bentsen, M.; Looso, M.; Stainier, D. Y. R.: AP-1 Contributes to Chromatin Accessibility to Promote Sarcomere Disassembly and Cardiomyocyte Protrusion During Zebrafish Heart Regeneration. CIRCULATION RESEARCH 126 (12), pp. 1760 - 1778 (2020)

Bensimon-Brito, A.; Ramkumar, S.; Boezio, G. L. M.; Guenther, S.; Kuenne, C.; Helker, C. S. M.; Sanchez-Iranzo, H.; Iloska, D.; Piesker, J.; Pullamsetti, S. et al.; Mercader, N.; Beis, D.; Stainier, D. Y. R.: TGF-beta Signaling Promotes Tissue Formation during Cardiac Valve Regeneration in Adult Zebrafish. DEVELOPMENTAL CELL 52 (1), pp. 9 - + (2020)

Bentsen, M.; Goymann, P.; Schultheis, H.; Klee, K.; Petrova, A.; Wiegandt, R.; Fust, A.; Preussner, J.; Kuenne, C.; Braun, T. et al.; Kim, J.; Looso, M.: ATAC-seq footprinting unravels kinetics of transcription factor binding during zygotic genome activation. NATURE COMMUNICATIONS 11 (1), 4267 (2020)

Fukuda, R.; Marin-Juez, R.; El-Sammak, H.; Beisaw, A.; Ramadass, R.; Kuenne, C.; Guenther, S.; Konzer, A.; Bhagwat, A. M.; Graumann, J. et al.; Stainier, D. Y. R.: Stimulation of glycolysis promotes cardiomyocyte proliferation after injury in adult zebrafish. EMBO REPORTS 21 (8), e49752 (2020)

Sarode, P.; Zheng, X.; Giotopoulou, G. A.; Weigert, A.; Kuenne, C.; Guenther, S.; Friedrich, A.; Gattenloehner, S.; Stiewe, T.; Bruene, B. et al.; Grimminger, F.; Stathopoulos, G. T.; Pullamsetti, S. S.; Seeger, W.; Savai, R.: Reprogramming of tumor-associated macrophages by targeting beta-catenin/FOSL2/ARID5A signaling: A potential treatment of lung cancer. SCIENCE ADVANCES 6 (23), eaaz6105 (2020)

Sreenivasan, K.; Ianni, A.; Kuenne, C.; Strilic, B.; Guenther, S.; Perdiguero, E.; Krueger, M.; Spuler, S.; Offermanns, S.; Gomez-del Arco, P. et al.; Miguel Redondo, J.; Munoz-Canoves, P.; Kim, J.; Braun, T.: Attenuated Epigenetic Suppression of Muscle Stem Cell Necroptosis Is Required for Efficient Regeneration of Dystrophic Muscles. CELL REPORTS 31 (7), UNSP 107652 (2020)

Cencioni, C.; Heid, J.; Krepelova, A.; Rasa, S. M. M.; Kuenne, C.; Guenther, S.; Baumgart, M.; Cellerino, A.; Neri, F.; Spallotta, F. et al.; Gaetano, C.: Aging Triggers H3K27 Trimethylation Hoarding in the Chromatin of Nothobranchius furzeri Skeletal Muscle. CELLS 8 (10), 1169 (2019)

El-Brolosy, M. A.; Kontarakis, Z.; Rossi, A.; Kuenne, C.; Guenther, S.; Fukuda, N.; Kikhi, K.; Boezio, G. L. M.; Takacs, C. M.; Lai, S.-L. et al.; Fukuda, R.; Gerri, C.; Giraldez, A. J.; Stainier, D. Y. R.: Genetic compensation triggered by mutant mRNA degradation. NATURE 568 (7751), pp. 193 - + (2019)

Frickmann, H.; Kuenne, C.; Hagen, R. M.; Podbielski, A.; Normann, J.; Poppert, S.; Looso, M.; Kreikemeyer, B.: Next-generation sequencing for hypothesis-free genomic detection of invasive tropical infections in poly-microbially contaminated, formalin-fixed, paraffin-embedded tissue samples - a proof-of-principle assessment. BMC MICROBIOLOGY 19, 75 (2019)

Gao, R.; Liang, X.; Cheedipudi, S.; Cordero, J.; Jiang, X.; Zhang, Q.; Caputo, L.; Guenther, S.; Kuenne, C.; Ren, Y. et al.; Bhattacharya, S.; Yuan, X.; Barreto, G.; Chen, Y.; Braun, T.; Evans, S. M.; Sun, Y.; Dobreva, G.: Pioneering function of Isl1 in the epigenetic control of cardiomyocyte cell fate. CELL RESEARCH 29 (6), pp. 486 - 501 (2019)